apraga/org - Change 7UKBDOEPXZUGDSVH23ULY6TQ657DP7YXUTVNTY37N3SZDK7SF7MQC

Merge branch 'main' of github.com:apraga/org

Created by Alexis Praga on January 30, 2023

7UKBDOEPXZUGDSVH23ULY6TQ657DP7YXUTVNTY37N3SZDK7SF7MQC

Dependencies

In channels

main

Change contents

Deletion in projects/bisonex.org at line 1427 [5.35]

B:BD[4.1548] → [3.2698:2816]

BD:BD[4.1548] → [3.2698:2816]

| tsv                 |       1087 |        1121 |             |             |            |            |            |

Solving an order conflict in projects/bisonex.org at line 1427 [5.35]
[2.1919]

Insertion in projects/bisonex.org at line 1427 [5.35]

[0.15]

[6.4283]

| tsv                 |       1087 |           |       1121 |            |            |            |            |            |

Resurrecting zombie bytes in projects/bisonex.org at line 2644 [5.35]

B:B[7.16889] → [2.1920:2773]

BD:B[7.16889] → [2.1920:2773]


****** KILL Vérifier sha256sum
CLOSED: [2023-01-24 Tue 23:00]
alignment: différent
****** KILL Comparer bam
CLOSED: [2023-01-25 Wed 21:58]
/Work/Users/apraga/bisonex/script/files〉picard CompareSAMs LENIENT_LOW_MQ_ALIGNMENT=true LENIENT_DUP=true tmp_63003856_S135/63003856_S135.bam /Work/Groups/bisonex/ref/tmp_63003856_S135/63003856_S135.bam O=compare-bam.tsv
picard CompareSAMs -LENIENT_LOW_MQ_ALIGNMENT true -LENIENT_DUP true tmp_63003856_S135/63003856_S135.bam /Work/Groups/bisonex/ref/tmp_63003856_S135/63003856_S135.bam -O compare-bam.tsv
VN Program Record attribute differs.
File 1: 1.13
File 2: 1.10
SAM files differ.
[Tue Jan 24 23:12:50 CET 2023] picard.sam.CompareSAMs done. Elapsed time: 7.32 minutes.
***** DONE Relancer avec la même version de samtools
CLOSED: [2023-01-25 Wed 21:58]
Pas d'impact
***** TODO Comparer tsv de sortie

Resurrecting zombie bytes in projects/bisonex.org at line 2664 [5.35]
B:B[7.16945] → [3.2817:2871]
BD:B[7.16945] → [3.2817:2871]
```
***** TODO Regarder où sont les variants différents
```
Solving an order conflict in projects/bisonex.org at line 2664 [5.35]
[2.2773]
[3.2817]