apraga/org - Change NAX67OG4L3U4EASE6LCR6GQ64L6KBADKENFFAGZV6H44VSLSFSMQC

Nixpkgs task update

Created by Alexis Praga on May 6, 2023

NAX67OG4L3U4EASE6LCR6GQ64L6KBADKENFFAGZV6H44VSLSFSMQC

Dependencies

In channels

main

Change contents

Replacement in projects.org at line 439 [6.123895]
B:BD[4.688] → [5.99:127]
```
SCHEDULED: <2023-04-15 Sat>
```
[4.688]
[4.716]
```
SCHEDULED: <2023-06-06 Tue>
```

Replacement in projects.org at line 2151 [6.123895]

B:BD[7.89] → [3.535:609]

** WAIT Remboursement TER Grenoble du 9 avril
SCHEDULED: <2023-05-03 Wed>

[7.89]

[3.609]

** DONE Remboursement TER Grenoble du 9 avril
CLOSED: [2023-05-06 Sat 09:06] SCHEDULED: <2023-05-03 Wed>

Replacement in projects.org at line 2155 [6.123895]
∅:D[7.89] → [8.316:322]
∅:D[9.601] → [8.316:322]
∅:D[3.678] → [8.316:322]
∅:D[10.1300] → [8.316:322]
∅:D[11.2233] → [8.316:322]
B:BD[8.316] → [8.316:322]
B:BD[8.322] → [10.1301:1309]
∅:D[12.29] → [13.245:262]
∅:D[14.41] → [13.245:262]
∅:D[15.264] → [13.245:262]
∅:D[10.1309] → [13.245:262]
∅:D[16.5234] → [13.245:262]
B:BD[13.245] → [13.245:262]
```
* Nix
** GATK
*** DONE Binaire
```
[3.678]
[13.262]
```
Refusé
* Nixpkgs :nix:
** DONE GATK
CLOSED: [2023-05-06 Sat 08:51]
*** DONE [[https://github.com/NixOS/nixpkgs/pull/185819][Binaire]]
```

Replacement in projects.org at line 2178 [6.123895]

B:BD[17.708] → [18.525:608]

*** WAIT Bug report Version 22.10.6
https://github.com/NixOS/nixpkgs/issues/192396

[17.708]

[18.608]

*** TODO [[https://github.com/NixOS/nixpkgs/issues/192396][Bug report Version 22.10.6]]
SCHEDULED: <2023-05-13 Sat>

Replacement in projects.org at line 2192 [6.123895]

B:BD[12.169] → [12.169:185]

** DONE BioPerl

[12.169]

[8.452]

** TODO VEP :vep:
*** DONE [[https://github.com/NixOS/nixpkgs/pull/185691][BioPerl]]

Replacement in projects.org at line 2197 [6.123895]

B:BD[8.529] → [15.348:380]

B:BD[15.380] → [5.128:156]

** STRT Nixpkg for BioDBBigFile
SCHEDULED: <2023-04-15 Sat>

[8.529]

[8.590]

*** STRT BioDBBBigFile
SCHEDULED: <2023-05-07 Sun>
:PROPERTIES:
:ORDERED:  t
:END:

Replacement in projects.org at line 2203 [6.123895]

B:BD[8.626] → [15.381:397]

B:BD[15.397] → [2.12:207]

Corriger review
*** TODO Version de kent déjà packagée : forcer version  335
**** WAIT il faut le [[ https://github.com/NixOS/nixpkgs/pull/206991/commits/b3dd4ac8abd6563342c4dc52325c9bf71944cff5][patch ici]]

[8.626]

[2.207]

**** TODO Version de kent déjà packagée : forcer version  335
***** WAIT [[https://github.com/NixOS/nixpkgs/pull/206991][Restore building kent 404]]

Replacement in projects.org at line 2206 [6.123895]

B:BD[2.255] → [2.255:305]

**** WAIT PR pour ajouter les header (inc folder)

[2.255]

[2.305]

Relancé <2023-05-06 Sat>
***** TODO [[https://github.com/NixOS/nixpkgs/pull/223411][Ajouter les header to package]] (inc folder)
SCHEDULED: <2023-05-07 Sun>
Review à faire

Replacement in projects.org at line 2211 [6.123895]

B:BD[2.350] → [2.350:533]

**** WAIT Mettre à jour le PR avec les 2 changements ci-dessous + patch pour avoir utils
https://github.com/NixOS/nixpkgs/pull/186462
*** KILL Version de kent déjà packagée : 404

[2.350]

[2.533]

***** WAIT [[https://github.com/NixOS/nixpkgs/pull/186462][BioDBBBigFile]] avec ces 2 changements
**** KILL Version de kent déjà packagée : 404

Replacement in projects.org at line 2215 [6.123895]
∅:D[19.99] → [20.111:140]
∅:D[21.343] → [20.111:140]
∅:D[15.397] → [20.111:140]
∅:D[2.602] → [20.111:140]
∅:D[22.4453] → [20.111:140]
B:BD[8.626] → [20.111:140]
B:BD[20.140] → [5.157:185]
```
** WAIT Nixpkg for BioDBHTS
SCHEDULED: <2023-04-15 Sat>
```
[2.602]
[23.45]
```
*** DONE [[https://github.com/NixOS/nixpkgs/pull/186459][BioDBHTS]]
CLOSED: [2023-05-06 Sat 08:49] SCHEDULED: <2023-04-15 Sat>
```
Replacement in projects.org at line 2219 [6.123895]
B:BD[23.82] → [19.133:134]
B:BD[19.134] → [22.4454:4485]
```
** DONE Nixpkg for BioExtAlign
```
[15.445]
[22.4485]
```
*** DONE [[https://github.com/NixOS/nixpkgs/pull/186464][BioExtAlign]]
```
Insertion in projects.org at line 2225 [6.123895]
[24.287]
[25.765]
```
*** TODO VEP
```
Replacement in projects.org at line 2228 [6.123895]
B:BD[25.766] → [17.709:726]
```
** TODO rtgtools
```
[25.766]
[24.288]
```
** TODO rtgtools :vcfeval:
```

Insertion in projects.org at line 2231 [6.123895]

[24.397]

[17.726]

*** TODO Version binaire sans plot
SCHEDULED: <2023-05-06 Sat>
** TODO Spip
SCHEDULED: <2023-05-06 Sat>
** TODO Happy
*** TODO PR python 3 upstream
SCHEDULED: <2023-05-06 Sat>
*** TODO nixpkgs en l'état
SCHEDULED: <2023-05-06 Sat>

Replacement in projects.org at line 2241 [6.123895]
∅:D[17.727] → [25.766:776]
B:BD[25.766] → [25.766:776]
```
* Voiture
```
[17.727]
[25.776]
```
* Voiture :voiture:
```

Insertion in projects.org at line 2255 [6.123895]

[13.606]

[25.986]


*** TODO Contrôle technique
**** TODO Prendre RV
SCHEDULED: <2023-05-07 Sun>

Nixpkgs task update

Dependencies

In channels

Change contents

Replacement in projects.org at line 439 [6.123895]

Replacement in projects.org at line 2151 [6.123895]

Replacement in projects.org at line 2155 [6.123895]

Replacement in projects.org at line 2178 [6.123895]

Replacement in projects.org at line 2192 [6.123895]

Replacement in projects.org at line 2197 [6.123895]

Replacement in projects.org at line 2203 [6.123895]

Replacement in projects.org at line 2206 [6.123895]

Replacement in projects.org at line 2211 [6.123895]

Replacement in projects.org at line 2215 [6.123895]

Replacement in projects.org at line 2219 [6.123895]

Insertion in projects.org at line 2225 [6.123895]

Replacement in projects.org at line 2228 [6.123895]

Insertion in projects.org at line 2231 [6.123895]

Replacement in projects.org at line 2241 [6.123895]

Insertion in projects.org at line 2255 [6.123895]