quietlight/skraak_mcp - Change XMW7BCZH73KYOJ2H2ZDQQU5NQMBKMX7TWB5HNN5PAB6RYLTWQ5VQC

catch up

Created by quietlight on April 11, 2026

XMW7BCZH73KYOJ2H2ZDQQU5NQMBKMX7TWB5HNN5PAB6RYLTWQ5VQC

Dependencies

In channels

main

Change contents

File addition: calls_clip_test.go (----------)

[4.22715]

package tools
import (
	"skraak/utils"
	"testing"
)
const testWAV = "../audio/20211028_211500.WAV"
// BenchmarkReadWAV benchmarks reading a WAV file
func BenchmarkReadWAV(b *testing.B) {
	for i := 0; i < b.N; i++ {
		_, _, err := utils.ReadWAVSamples(testWAV)
		if err != nil {
			b.Fatal(err)
		}
	}
}
// BenchmarkResample benchmarks resampling from 48kHz to 16kHz
func BenchmarkResample(b *testing.B) {
	samples, sr, _ := utils.ReadWAVSamples(testWAV)
	b.Logf("samples=%d sr=%d", len(samples), sr)
	b.ResetTimer()
	for i := 0; i < b.N; i++ {
		utils.ResampleRate(samples, sr, 16000)
	}
}
// BenchmarkSpectrogram benchmarks spectrogram generation on a 23s clip
func BenchmarkSpectrogram(b *testing.B) {
	samples, sr, _ := utils.ReadWAVSamples(testWAV)
	segSamples := utils.ExtractSegmentSamples(samples, sr, 872, 895)
	resampled := utils.ResampleRate(segSamples, sr, 16000)
	b.Logf("segSamples=%d resampled=%d", len(segSamples), len(resampled))
	cfg := utils.DefaultSpectrogramConfig(16000)
	b.ResetTimer()
	for i := 0; i < b.N; i++ {
		utils.GenerateSpectrogram(resampled, cfg)
	}
}
// BenchmarkResize benchmarks image resize
func BenchmarkResize(b *testing.B) {
	samples, sr, _ := utils.ReadWAVSamples(testWAV)
	segSamples := utils.ExtractSegmentSamples(samples, sr, 872, 895)
	resampled := utils.ResampleRate(segSamples, sr, 16000)
	cfg := utils.DefaultSpectrogramConfig(16000)
	spectrogram := utils.GenerateSpectrogram(resampled, cfg)
	img := utils.CreateGrayscaleImage(spectrogram)
	b.ResetTimer()
	for i := 0; i < b.N; i++ {
		utils.ResizeImage(img, 224, 224)
	}
}
// BenchmarkWriteWAV benchmarks writing a WAV clip
func BenchmarkWriteWAV(b *testing.B) {
	samples, sr, _ := utils.ReadWAVSamples(testWAV)
	segSamples := utils.ExtractSegmentSamples(samples, sr, 872, 895)
	b.Logf("segSamples=%d", len(segSamples))
	b.ResetTimer()
	for i := 0; i < b.N; i++ {
		utils.WriteWAVFile("/dev/null", segSamples, sr)
	}
}
// BenchmarkFullClip benchmarks the full clip generation pipeline (minus WAV read)
func BenchmarkFullClip(b *testing.B) {
	samples, sr, _ := utils.ReadWAVSamples(testWAV)
	b.ResetTimer()
	for i := 0; i < b.N; i++ {
		segSamples := utils.ExtractSegmentSamples(samples, sr, 872, 895)
		resampled := utils.ResampleRate(segSamples, sr, 16000)
		cfg := utils.DefaultSpectrogramConfig(16000)
		spectrogram := utils.GenerateSpectrogram(resampled, cfg)
		img := utils.CreateGrayscaleImage(spectrogram)
		resized := utils.ResizeImage(img, 224, 224)
		_ = resized
		utils.WriteWAVFile("/dev/null", segSamples, sr)
	}
}

Replacement in me.txt at line 72 [6.1]

B:BD[5.208] → [5.208:279]

        run(pipeline(`skraak calls from-preds --csv $item`, jsonfile))

[5.208]

[5.279]

        run(pipeline(`skraak calls from-preds --csv $item --gap-multiplier 3 --min-detections 1`, jsonfile))

Replacement in me.txt at line 115 [6.1]
∅:D[7.515] → [8.731:774]
B:BD[8.731] → [8.731:774]
```
open("summary_2026-03-13.jsonl", "w") do f
```
[7.515]
[8.774]
```
open("/home/david/summary_2026-04-12_2.jsonl", "w") do f
```
Deletion in me.txt at line 127 [6.1]
B:BD[7.520] → [2.84:181]
∅:D[2.181] → [7.520:523]
B:BD[7.520] → [7.520:523]
```
skraak calls classify --folder . --reviewer dave --bind k=Kiwi --species Kiwi --species Morepork
```

Insertion in me.txt at line 237 [6.1]

[3.1725]


● Summary: Pomona-4 & TwentyFourSeven — 2026-04-06 data, classified 2026-04-11/12
  16 folders across 2 datasets, all auto-classified, none reviewed yet.
  Pomona-4 (9 folders)
  ┌──────────┬────────────┬──────────┬────────────┬────────────┬────────────┬────────────┐
  │ Location │ Data Files │ Segments │ Kiwi (1.0) │ Kiwi (1.2) │ Kiwi (1.5) │ Unreviewed │
  ├──────────┼────────────┼──────────┼────────────┼────────────┼────────────┼────────────┤
  │ M04      │ 1523       │ 9442     │ 1172       │ 767        │ 663        │ 2602       │
  ├──────────┼────────────┼──────────┼────────────┼────────────┼────────────┼────────────┤
  │ H04      │ 1167       │ 5680     │ 879        │ 655        │ 531        │ 2065       │
  ├──────────┼────────────┼──────────┼────────────┼────────────┼────────────┼────────────┤
  │ F10      │ 1216       │ 4443     │ 867        │ 893        │ 915        │ 2680       │
  ├──────────┼────────────┼──────────┼────────────┼────────────┼────────────┼────────────┤
  │ A05      │ 660        │ 3397     │ 43         │ 21         │ 17         │ 81         │
  ├──────────┼────────────┼──────────┼────────────┼────────────┼────────────┼────────────┤
  │ N20      │ 751        │ 3061     │ 46         │ 39         │ 38         │ 123        │
  ├──────────┼────────────┼──────────┼────────────┼────────────┼────────────┼────────────┤
  │ G05      │ 878        │ 2644     │ 707        │ 779        │ 774        │ 2260       │
  ├──────────┼────────────┼──────────┼────────────┼────────────┼────────────┼────────────┤
  │ D09      │ 719        │ 2438     │ 407        │ 519        │ 552        │ 1486       │
  ├──────────┼────────────┼──────────┼────────────┼────────────┼────────────┼────────────┤
  │ N14      │ 389        │ 1014     │ 206        │ 79         │ 57         │ 343        │
  ├──────────┼────────────┼──────────┼────────────┼────────────┼────────────┼────────────┤
  │ C05      │ 0          │ 0        │ —          │ —          │ —          │ 0          │
  ├──────────┼────────────┼──────────┼────────────┼────────────┼────────────┼────────────┤
  │ D03      │ 0          │ 0        │ —          │ —          │ —          │ 0          │
  └──────────┴────────────┴──────────┴────────────┴────────────┴────────────┴────────────┘
  Pomona totals: 7,303 data files, 32,119 segments, 11,640 unreviewed
  TwentyFourSeven (6 folders, filters 1.2 + 1.5 only)
  ┌──────────┬────────────┬──────────┬────────────┬────────────┬────────────┐
  │ Location │ Data Files │ Segments │ Kiwi (1.2) │ Kiwi (1.5) │ Unreviewed │
  ├──────────┼────────────┼──────────┼────────────┼────────────┼────────────┤
  │ F09      │ 376        │ 606      │ 178        │ 190        │ 369        │
  ├──────────┼────────────┼──────────┼────────────┼────────────┼────────────┤
  │ G05      │ 258        │ 444      │ 173        │ 180        │ 353        │
  ├──────────┼────────────┼──────────┼────────────┼────────────┼────────────┤
  │ H01      │ 284        │ 357      │ 38         │ 37         │ 76         │
  ├──────────┼────────────┼──────────┼────────────┼────────────┼────────────┤
  │ J11      │ 213        │ 259      │ 6          │ 8          │ 14         │
  ├──────────┼────────────┼──────────┼────────────┼────────────┼────────────┤
  │ C03      │ 95         │ 149      │ 50         │ 54         │ 104        │
  ├──────────┼────────────┼──────────┼────────────┼────────────┼────────────┤
  │ P09      │ 71         │ 91       │ 16         │ 22         │ 39         │
  └──────────┴────────────┴──────────┴────────────┴────────────┴────────────┘
  247 totals: 1,297 data files, 1,906 segments, 955 unreviewed
  Key observations
  - C05 and D03 have no data files — empty folders
  - M04 is the busiest site (9,442 segments) with high kiwi counts across all filters
  - F10 and G05 show strong kiwi presence that's consistent across filter thresholds — high-confidence sites
  - A05 and N20 have many segments but very few kiwi — low-activity sites
  - Gecko detections appear at D09, F10, N14, H01, F09 (small numbers)
  - All classifications are by "Auto", reviewer "None" — nothing has been human-reviewed yet

Replacement in db/schema.sql at line 30 [4.305331]

B:BD[9.147023] → [3.1736:1792]

    -- FOREIGN KEY (dataset_id) REFERENCES dataset(id),

[9.147023]

[9.147076]

    FOREIGN KEY (dataset_id) REFERENCES dataset(id),

Replacement in db/schema.sql at line 56 [4.305331]

B:BD[9.147345] → [3.1793:1997]

    -- FOREIGN KEY (dataset_id) REFERENCES dataset(id),
    -- FOREIGN KEY (location_id) REFERENCES location(id),
    -- FOREIGN KEY (cyclic_recording_pattern_id) REFERENCES cyclic_recording_pattern(id),

[9.147345]

[9.147433]

    FOREIGN KEY (dataset_id) REFERENCES dataset(id),
    FOREIGN KEY (location_id) REFERENCES location(id),
    FOREIGN KEY (cyclic_recording_pattern_id) REFERENCES cyclic_recording_pattern(id),

Replacement in db/schema.sql at line 79 [4.305331]

B:BD[4.311079] → [3.1998:2148]

    active BOOLEAN DEFAULT TRUE -- ,
    -- FOREIGN KEY (location_id) REFERENCES location(id),
    -- FOREIGN KEY (cluster_id) REFERENCES cluster(id)

[4.311079]

[4.311219]

    active BOOLEAN DEFAULT TRUE,
    FOREIGN KEY (location_id) REFERENCES location(id),
    FOREIGN KEY (cluster_id) REFERENCES cluster(id)

Replacement in db/schema.sql at line 93 [4.305331]

B:BD[4.312215] → [3.2149:2235]

    active BOOLEAN DEFAULT TRUE -- ,
    -- FOREIGN KEY (file_id) REFERENCES file(id)

[4.312215]

[4.312294]

    active BOOLEAN DEFAULT TRUE,
    FOREIGN KEY (file_id) REFERENCES file(id)

Replacement in db/schema.sql at line 102 [4.305331]

B:BD[4.312631] → [3.2236:2322]

    active BOOLEAN DEFAULT TRUE -- ,
    -- FOREIGN KEY (file_id) REFERENCES file(id)

[4.312631]

[4.312710]

    active BOOLEAN DEFAULT TRUE,
    FOREIGN KEY (file_id) REFERENCES file(id)

Replacement in db/schema.sql at line 112 [4.305331]

B:BD[4.313159] → [3.2323:2471]

    PRIMARY KEY (file_id, dataset_id) -- ,
    -- FOREIGN KEY (file_id) REFERENCES file(id),
    -- FOREIGN KEY (dataset_id) REFERENCES dataset(id)

[4.313159]

[4.313297]

    PRIMARY KEY (file_id, dataset_id),
    FOREIGN KEY (file_id) REFERENCES file(id),
    FOREIGN KEY (dataset_id) REFERENCES dataset(id)

Replacement in db/schema.sql at line 129 [4.305331]

B:BD[4.314135] → [3.2472:2702]

    active BOOLEAN DEFAULT TRUE -- ,
    -- FOREIGN KEY (file_id) REFERENCES file(id),
    -- FOREIGN KEY (dataset_id) REFERENCES dataset(id),
    -- FOREIGN KEY (file_id, dataset_id) REFERENCES file_dataset(file_id, dataset_id)

[4.314135]

[4.314821]

    active BOOLEAN DEFAULT TRUE,
    FOREIGN KEY (file_id) REFERENCES file(id),
    FOREIGN KEY (dataset_id) REFERENCES dataset(id),
    FOREIGN KEY (file_id, dataset_id) REFERENCES file_dataset(file_id, dataset_id)

Replacement in db/schema.sql at line 162 [4.305331]

B:BD[4.316200] → [3.2703:2848]

    active BOOLEAN DEFAULT TRUE -- ,
    -- FOREIGN KEY (ebird_code, taxonomy_version) REFERENCES ebird_taxonomy(species_code, taxonomy_version)

[4.316200]

[4.316338]

    active BOOLEAN DEFAULT TRUE,
    FOREIGN KEY (ebird_code, taxonomy_version) REFERENCES ebird_taxonomy(species_code, taxonomy_version)

Replacement in db/schema.sql at line 172 [4.305331]

B:BD[4.316828] → [3.2849:2941]

    active BOOLEAN DEFAULT TRUE -- ,
    -- FOREIGN KEY (species_id) REFERENCES species(id)

[4.316828]

[4.316913]

    active BOOLEAN DEFAULT TRUE,
    FOREIGN KEY (species_id) REFERENCES species(id)

Replacement in db/schema.sql at line 193 [4.305331]

B:BD[4.317813] → [3.2942:3153]

    active BOOLEAN NOT NULL DEFAULT true -- ,
    -- FOREIGN KEY (segment_id) REFERENCES segment(id),
    -- FOREIGN KEY (species_id) REFERENCES species(id),
    -- FOREIGN KEY (filter_id) REFERENCES filter(id)

[4.317813]

[10.8680]

    active BOOLEAN NOT NULL DEFAULT true,
    FOREIGN KEY (segment_id) REFERENCES segment(id),
    FOREIGN KEY (species_id) REFERENCES species(id),
    FOREIGN KEY (filter_id) REFERENCES filter(id)

Replacement in db/schema.sql at line 204 [4.305331]

B:BD[11.1829] → [3.3154:3242]

    active BOOLEAN DEFAULT TRUE -- ,
    -- FOREIGN KEY (label_id) REFERENCES label(id)

[11.1829]

[4.318015]

    active BOOLEAN DEFAULT TRUE,
    FOREIGN KEY (label_id) REFERENCES label(id)

Replacement in db/schema.sql at line 216 [4.305331]

B:BD[4.318630] → [3.3243:3453]

    active BOOLEAN NOT NULL DEFAULT true -- ,
    -- FOREIGN KEY (label_id) REFERENCES label(id),
    -- FOREIGN KEY (calltype_id) REFERENCES call_type(id),
    -- FOREIGN KEY (filter_id) REFERENCES filter(id)

[4.318630]

[9.148978]

    active BOOLEAN NOT NULL DEFAULT true,
    FOREIGN KEY (label_id) REFERENCES label(id),
    FOREIGN KEY (calltype_id) REFERENCES call_type(id),
    FOREIGN KEY (filter_id) REFERENCES filter(id)

Replacement in db/schema.sql at line 223 [4.305331]

B:BD[9.149417] → [3.3454:3564]

-- CREATE INDEX idx_file_location ON file(location_id);
-- CREATE INDEX idx_file_cluster ON file(cluster_id);

[9.149417]

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CREATE INDEX idx_file_location ON file(location_id);
CREATE INDEX idx_file_cluster ON file(cluster_id);

Replacement in db/schema.sql at line 226 [4.305331]

B:BD[9.149573] → [3.3565:3632]

-- CREATE INDEX idx_file_timestamp_local ON file(timestamp_local);

[9.149573]

[12.131738]

CREATE INDEX idx_file_timestamp_local ON file(timestamp_local);

Replacement in db/schema.sql at line 228 [4.305331]

B:BD[12.131781] → [3.3633:3747]

-- CREATE INDEX idx_segment_file ON segment(file_id);
-- CREATE INDEX idx_segment_dataset ON segment(dataset_id);

[12.131781]

[9.149798]

CREATE INDEX idx_segment_file ON segment(file_id);
CREATE INDEX idx_segment_dataset ON segment(dataset_id);

Replacement in db/schema.sql at line 231 [4.305331]

B:BD[9.149839] → [3.3748:3866]

-- CREATE INDEX idx_label_segment_id ON label(segment_id);
-- CREATE INDEX idx_label_species_id ON label(species_id);

[9.149839]

[9.149955]

CREATE INDEX idx_label_segment_id ON label(segment_id);
CREATE INDEX idx_label_species_id ON label(species_id);

Replacement in db/schema.sql at line 234 [4.305331]

B:BD[9.150004] → [3.3867:4088]

-- CREATE INDEX idx_label_subtype_label_id ON label_subtype(label_id);
-- CREATE INDEX idx_label_subtype_calltype_id ON label_subtype(calltype_id);
-- CREATE INDEX idx_label_subtype_filter_id ON label_subtype(filter_id);

[9.150004]

[9.150216]

CREATE INDEX idx_label_subtype_label_id ON label_subtype(label_id);
CREATE INDEX idx_label_subtype_calltype_id ON label_subtype(calltype_id);
CREATE INDEX idx_label_subtype_filter_id ON label_subtype(filter_id);

Replacement in db/schema.sql at line 238 [4.305331]

B:BD[9.150275] → [3.4089:4188]

-- CREATE INDEX idx_ebird_taxonomy_species_code ON ebird_taxonomy(species_code, taxonomy_version);

[9.150275]

[9.150371]

CREATE INDEX idx_ebird_taxonomy_species_code ON ebird_taxonomy(species_code, taxonomy_version);

Replacement in db/schema.sql at line 240 [4.305331]

B:BD[9.150405] → [3.4189:4259]

-- CREATE INDEX idx_file_dataset_dataset ON file_dataset(dataset_id);

[9.150405]

[13.189]

CREATE INDEX idx_file_dataset_dataset ON file_dataset(dataset_id);

Replacement in .claude/skills/call-classification/SKILL.md at line 40 [14.15630]

B:BD[14.18879] → [15.1384:1458]

Use `--species GSK` for all calltypes, `--species GSK+Male` for specific.

[14.18879]

[14.18984]

Use `--species Kiwi` for all calltypes, `--species Kiwi+Male` for specific.

Insertion in .claude/skills/call-classification/SKILL.md at line 103 [14.15630]
[14.23181]
[15.3410]
```
- **REVIEW EVERY PNG FILE**
```

Replacement in .claude/skills/call-classification/SKILL.md at line 110 [14.15630]

B:BD[15.3852] → [15.3852:4037]

- ML models ~90% accurate; **goal is upgrading certainty on correct ones**
- Use `--size 448` if more detail needed (higher token cost)
- Always report clip count before reading images

[15.3852]

[16.2363]

- **goal is upgrading certainty on correct ones**
- **REVIEW EVERY PNG FILE**

Insertion in .claude/skills/call-classification/SKILL.md at line 140 [14.15630]
[14.24011]
[15.4404]
```
- Use `--size 448` if more detail needed (higher token cost)
```