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Pour éviter les soucis de connexion, on modifie juste le dossier partagé:https://drive.google.com/drive/folders/11wJ0E_KZv7I88wdv_ULHqd5KvWFfF0DF?usp=sharing_eip_m&invite=CPX0rho&ts=63ea1879Autres drives :alexis: https://drive.proton.me/urls/PQ5M6TKVRM#q8yulEV8T5WGpapa : https://www.mailo.com/mailo/docs/docs.php?s=IaK9Ajz8kwQJXNPnhJofRuDwyrNSZVy4&dir=mqn0f3%2bozZXc%2bwh4DeXwhVTY1Zz4zci5rZ4XcNHRmX7wPT0d9WG%2b0g%3d%3d&ea_encode=0*** DONE Copier photos famille drive papa -> drive proton, drive yvain sur drive familleCLOSED: [2023-02-12 Sun 23:17]*** TODO Copier photos famille depuis drive yvain sur drive famille*** TODO Trier photos sur drive yvain** DONE certificat de baptêmeCLOSED: [2023-11-22 Wed 20:28] SCHEDULED: <2023-11-21 Tue>/Entered on/ [2023-10-11 Wed 23:13]Message envoyé sur le site 2023-10-11 Wed*** DONE AppelerCLOSED: [2023-11-21 Tue 22:52] SCHEDULED: <2023-11-21 Tue>*** DONE Demander à AurélienCLOSED: [2023-11-21 Tue 22:52] SCHEDULED: <2023-11-21 Tue>** DONE Payer inscription gymnastiqueCLOSED: [2023-11-21 Tue 22:52] SCHEDULED: <2023-11-21 Tue>/Entered on/ [2023-11-19 Sun 22:41]** DONE Réserver location skiCLOSED: [2023-11-23 Thu 21:45] SCHEDULED: <2023-11-22 Wed>/Entered on/ [2023-11-22 Wed 22:04]** TODO Command minoxidilSCHEDULED: <2023-11-26 Sun>/Entered on/ [2023-11-25 Sat 11:30]* Génétique** Collège [0/32]*** 1. Architecture du génome*** 2. Structure et fonction du génome humains: chromosomes sexuels*** 3. Structure et fonction du génome humains*** 4. Hérédité mendélienne*** 5. Génétique des populations*** 6. Cytogénétique conventionnelle*** 7. Cytogénétique moléculaire*** 8. Anomalies hémopathies et tumeurs solides*** STRT 9.Anomalies génétiques à l’échelle du gène*** STRT 10. Principales techniques d’analyses des anomalies génétiques à l’échelle du gène*** 11. Séquencage haut débit*** 12. Conseil génétique*** 13. Examen de l’enfant*** 14. Hétérogénéite des maladies génétiques*** 15. DPN, DPI*** 16. Dépistage néonatal*** 17. DPS*** 18. Dispositions législatives*** 19. Enjeux éthiques*** 20. Maladies mitochondriales*** 21. Empreinte parentale*** 22. Mutations dynamiques*** 23. Oncogénétique*** 24. Bases de données*** 25. Perspectives thérapeutiques*** 26. Pharmacogénétique*** 27. Génétique des maladies complexes*** 28. T21*** 29. Mucoviscidose*** 30. Xfragile*** 31. Maladies rares*** 32. Médecine génomique** TODO Biologie cellulaire et moléculaire Dunod [22/209]*** DONE Fiche 1*** DONE Fiche 2*** DONE Fiche 3*** DONE Fiche 4*** DONE Fiche 5*** DONE Fiche 6*** DONE Fiche 7*** DONE Fiche 8*** DONE Fiche 9*** DONE Fiche 10*** DONE Fiche 11*** DONE Fiche 12*** DONE Fiche 13*** DONE Fiche 14*** DONE Fiche 15*** DONE Fiche 16*** DONE Fiche 17*** Fiche 18*** Fiche 19*** Fiche 20*** Fiche 21*** Fiche 22*** Fiche 23*** Fiche 24*** Fiche 25*** Fiche 26*** Fiche 27*** Fiche 28*** DONE Fiche 29*** Fiche 30*** Fiche 31*** Fiche 32*** Fiche 33*** Fiche 34*** Fiche 35*** Fiche 36*** Fiche 37*** Fiche 38*** Fiche 39*** Fiche 40*** Fiche 41*** Fiche 42*** DONE Fiche 43*** Fiche 44*** DONE Fiche 45*** DONE Fiche 46*** DONE Fiche 47*** Fiche 48*** Fiche 49*** Fiche 50*** Fiche 51*** Fiche 52*** Fiche 53*** Fiche 54*** Fiche 55*** Fiche 56*** Fiche 57*** Fiche 58*** Fiche 59*** Fiche 60*** Fiche 61*** Fiche 62*** Fiche 63*** Fiche 64*** Fiche 65*** Fiche 66*** Fiche 67*** Fiche 68*** Fiche 69*** Fiche 70*** Fiche 71*** Fiche 72*** Fiche 73*** Fiche 74*** Fiche 75*** Fiche 76*** Fiche 77*** Fiche 78*** Fiche 79*** Fiche 80*** Fiche 81*** Fiche 82*** Fiche 83*** Fiche 84*** Fiche 85*** Fiche 86*** Fiche 87*** Fiche 88*** Fiche 89*** Fiche 90*** Fiche 91*** Fiche 92*** Fiche 93*** Fiche 94*** Fiche 95*** Fiche 96*** Fiche 97*** Fiche 98*** Fiche 99*** Fiche 100*** Fiche 101*** Fiche 102*** Fiche 103*** Fiche 104*** Fiche 105*** Fiche 106*** Fiche 107*** Fiche 108*** Fiche 109*** Fiche 110*** Fiche 111*** Fiche 112*** Fiche 113*** Fiche 114*** Fiche 115*** Fiche 116*** Fiche 117*** Fiche 118*** Fiche 119*** Fiche 120*** Fiche 121*** Fiche 122*** Fiche 123*** Fiche 124*** Fiche 125*** Fiche 126*** Fiche 127*** Fiche 128*** Fiche 129*** Fiche 130*** Fiche 131*** Fiche 132*** Fiche 133*** Fiche 134*** Fiche 135*** Fiche 136*** Fiche 137*** Fiche 138*** Fiche 139*** Fiche 140*** Fiche 141*** Fiche 142*** Fiche 143*** Fiche 144*** Fiche 145*** Fiche 146*** Fiche 147*** Fiche 148*** Fiche 149*** Fiche 150*** Fiche 151*** Fiche 152*** Fiche 153*** Fiche 154*** Fiche 155*** Fiche 156*** Fiche 157*** Fiche 158*** Fiche 159*** Fiche 160*** Fiche 161*** Fiche 162*** Fiche 163*** Fiche 164*** Fiche 165*** Fiche 166*** Fiche 167*** Fiche 168*** Fiche 169*** Fiche 170*** Fiche 171*** Fiche 172*** Fiche 173*** Fiche 174*** Fiche 175*** Fiche 176*** Fiche 177*** Fiche 178*** Fiche 179*** Fiche 180*** Fiche 181*** Fiche 182*** Fiche 183*** Fiche 184*** Fiche 185*** Fiche 186*** Fiche 187*** Fiche 188*** Fiche 189*** Fiche 190*** Fiche 191*** Fiche 192*** Fiche 193*** Fiche 194*** Fiche 195*** Fiche 196*** Fiche 197*** Fiche 198*** Fiche 199*** Fiche 200*** Fiche 201*** Fiche 202*** Fiche 203*** Fiche 204*** Fiche 205*** Fiche 206*** Fiche 207*** Fiche 208*** Fiche 209** TODO Biologie chimie Dunod
* Santé
* Maison:PROPERTIES::CATEGORY: maison:END:** Serveur:PROPERTIES::CATEGORY: serveur:END:*** Seedbox:PROPERTIES::CATEGORY: seedbox:END:**** DONE Location (blackfriday)CLOSED: [2023-11-20 Mon 19:32] SCHEDULED: <2023-11-20 Mon>/Entered on/ [2023-11-20 Mon 18:29]**** TODO Re-partager musique :red:SCHEDULED: <2023-12-04 Mon>**** TODO Re-partager livres :mam:SCHEDULED: <2023-12-02 Sat>**** DONE Configurer rtorrentCLOSED: [2023-11-20 Mon 22:53] SCHEDULED: <2023-11-21 Tue>**** DONE Tester 1 livres :mam:CLOSED: [2023-11-20 Mon 22:05] SCHEDULED: <2023-11-21 Tue>**** DONE Ouvrir IP :mam:CLOSED: [2023-11-20 Mon 22:22] SCHEDULED: <2023-11-21 Tue>**** DONE Vérifier connectivity :mam:CLOSED: [2023-11-20 Mon 22:22] SCHEDULED: <2023-11-21 Tue>/Entered on/ [2023-11-20 Mon 22:04]* Moto:PROPERTIES::CATEGORY: moto:END:* Programmation :cs:** Gentoo :gentoo:*** GURU :guru:**** DONE Ebuild pour adapteur wifi TBW-108BCLOSED: [2023-05-22 Mon 22:50]Sur branche dev**** DONE net-wireless/rtl8723bu: migration to linux-mod-r1.eclassCLOSED: [2023-07-02 Sun 11:13] SCHEDULED: <2023-07-02 Sun>**** DONE Ebuild hutCLOSED: [2023-07-02 Sun 10:57]sur dev*** TODO Article nzbget sur wiki/Entered on/ [2022-10-22 Sat 17:31]** Learning Haskell :haskell:*** [#A] [[https://www.reddit.com/r/haskell/comments/npxfba/comment/h084wwa/?utm_source=share&utm_medium=web2x&context=3][Reddit suggestion]]]**** Learn Foundational building blocks- [X] [[https://mmhaskell.com/monads/functors][Functor]]- [X] [[https://mmhaskell.com/monads/applicatives][Applicatives]]- [X] [[https://mmhaskell.com/monads/tutorial][Monads]]- [X] [[https://mmhaskell.com/monads/reader-writer][Reader, writer]]- [X] [[https://mmhaskell.com/monads/state][State]]- [X] [[https://mmhaskell.com/monads/transformers][Transformers]]- [ ] [[https://mmhaskell.com/monads/laws][Laws]]**** Real-world example***** STRT Look at the example- [X] Database- [ ] API***** Relax for a few days and watch how interactive programs are being composed***** Get back to the real-world example and make it a complete Cabal project.***** [[https://mmhaskell.com/testing/test-driven-development][Testing]]**** [#A] Best resource : [[https://downloads.haskell.org/~ghc/8.10.4/docs/html/users_guide/glasgow_exts.html#language-options][Language Reference]]whenever you see an unknown language extension or a compilation flag, look it up in Language Reference and try to understand it. You don't have to fully understand them though, just read about them and keep them on your mind. One day they will begin to automatically click into a sound set of concepts.Language Reference is one of the most underappreciated sources of information (it's almost universally overlooked in language communities - it was the case for Python, and I find it to be true for Haskell as well). You mentioned that you don't like REPL examples, and neither do I. Luckily, the User Guide/Reference has introductory sections for people like us. Once I knew how to compile a single file and to run it, the rest was just a matter of getting to know things by their name in a new ecosystem.**** DONE Learn to compose thingsWhen you already know how to compile and run single-module interactive console programs, it takes about a day to understand basics of Cabal, and about a week to learn about input parsing and output formatting. Do you need CLI args? Use optparse-applicative. Env vars? Use envy. JSON? Use aeson and a cheatsheet. Don't think about performance and/or API conventions, that's not what you should be concerned of at this point, as you are just learning to compose things together from individual parts.**** Experiment with various libraires, read haskell planetariumAt this point you have enough knowledge to begin experimenting with various libraries and APIs. Learn how to use Hoogle, and read as much as you can/want on Haskell Planetarium.*** KILL Learn Haskell for your greater good:PROPERTIES::CUSTOM_ID: kill-learn-haskell-for-your-greater-good:END:50%*** HOLD [[books.org::Haskell%20Programming%20From%20First%20Principles][Haskell programming from first principles]]*** TODO 24 days of haskell**** TODO <[Hackage 2015]> - "https://conscientiousprogrammer.com/blog/2015/11/30/haskell-tidbits-24-days-of-hackage-2015-day-1-introduction-and-stack/"**** TODO <[GHC extensions]> - "https://blog.ocharles.org.uk/pages/2014-12-01-24-days-of-ghc-extensions.html"*** STRT <[Hackage 2012]> - https://blog.ocharles.org.uk/pages/2012-12-01-24-days-of-hackage.html-> postgresql*** TODO <[Hackage 2013]> - https://blog.ocharles.org.uk/pages/2013-12-01-24-days-of-hackage.html*** GHC**** GHC commentaryNotamment Ollie Charles's 24 days of GHC Extensions,**** Lire [[https://www.aosabook.org/en/ghc.html]]*** Vidéos**** STRT https://www.youtube.com/watch?v=re96UgMk6GQ*** Articles historiques1. [[https://watermark.silverchair.com/320098.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAsYwggLCBgkqhkiG9w0BBwagggKzMIICrwIBADCCAqgGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMHXfjdjwhGI2t4bLLAgEQgIICeQjZ-I8gmuaFqBktP4IOifHODtMAHcNF_LwRYyq7NswQ7vT6LJho9P_junCAORLGMV9dgq9JMePH2PFKNxXxrEP1VY7rIDG0gzoeObSkgMDn4MXalrIxD3ejY8vsGYy6vce8Kh70J_UJ8RamO1l3BNNUzy2W6VRaa_cMQr_ekdwcz0oihz0BVKn_bgm_8DjiiPhzj8uU9flVhi13t_oIFA6b3At2QMmPe7Z9OyfLkXivKkmKKNoHwSS7AnTIYAKCO383e4kG6NzZ_elai-XMAJs2Nk0vcgaltld1KeaW3269104DdIlFGevJUVNgwE_4LIheSYRZr9Gr0yRR6TROxdsyxrmgQ22Pzxxpnl8-KdjkW6aRSCKNk_yb5hYcPoRa3ldc5yPV15j8i4t9Mv4U_mBwmIRtMIKPdEHeMvcRx6c8_8uT4RV2esuOPfZlA05bzBgJhMS87M8myxisH-exkTMkm58o6nzHf1lGxzn_JS1VSHbhJCUl82ubzzOWjvl3QJM_vv805XTbn_G-fcRi0d9EQIRTqoObWVFyXW-pz16bWoZPZnBQ1gOmc3hPTGBMZjFR6p9VEAO7bKcK8o0yQDjVWEELNwfAAHc-oF_wLiEjXDNBoUttghgQzzvymKY_jSZhcU8TraVu2i551fpuDNEjSJd0qY5Rg3J6eWU550nJmnoWmX6o7KGiYp0vVMfOoFYXJ1trZWSGoRhDQP2LOLIOt3t2idlj6kV_MoCY3BRnkbxf4XIH7gLJf6Dky6hXFbTU8Fjsn8XHBeKSmaAYJ-sbmGB_BdZO8hHyvHvPv0lTtGcSuKywoJhMbblXRzyuacj_6mZQl5j3tAWhy][Why functional programming matters]]Très lisible2. [[https://dl.acm.org/doi/pdf/10.1145/91556.91592][Comprehending monads]]Introduction du concept3. [[https://dl.acm.org/doi/pdf/10.1145/158511.158524][Imperative functional programming]]Application des monads poru résoudre le problème IO** Julia:PROPERTIES::CATEGORY: julia:END:*** TODO Juliacon 2023:PROPERTIES::ID: 42f6a7bf-ac90-4737-884e-c35187776a4c:END:- [ ] <[Graphs, matrices]> - <yt-play "X2JEWdCFf70">- [ ] <[Alan, julia and climate]> - <yt-play "SclkiqCn4Cs">- [ ] <[Sherlocks Homes, mathematics and julia]> - <yt-play "zX-U6-6Prso">- [ ] <[Sound synthesis]> - <yt-play "SvnDr9nnOZs">- [ ] <[JuMP by example]> - <yt-play "rIan_XbYyaM">- [ ] <[neurophysiological symbolic modeling]> - <yt-play "qC6tzsn8Uxc">- [ ] <yt-play "ipDCx174Qkw">- [ ] <yt-play "hKa2eTeb_lo">- [ ] <yt-play "4omFGfcvvOY">- [ ] <yt-play "d7SA36kVaq0">- [ ] <yt-play "5uF3VqgjiVE">- [ ] <yt-play "jIuRXzo4m38">- [ ] <yt-play "iUarLpmZmco">- [ ] <yt-play "WVT9wJegC6Q">- [ ] <yt-play "ZVvP7rAIvkE">- [ ] <yt-play "RXjjTQffen0">- [ ] <yt-play "TpyHGaCB8P4">- [ ] <yt-play "ksh-CNM2YJU">- [ ] <yt-play "_sZdWVZeKqI">- [ ] <yt-play "_Y6mNrN7eWA">- [ ] <yt-play "tnw_BI2tRaA">- [ ] <yt-play "qgmgg_Bzgyg">- [ ] <yt-play "Nlq3J7PCB_Q">- [ ] <yt-play "ruxYAY5_bfE">- [X] <[Biomakie.jl]> - <yt-play "-C7Zbh6UTgk">- [X] <[machine learing for biological data]> - <yt-play "Q9eYgwvJfWE">- [X] <[Genomic analysis]> - <yt-play "egWrDz6RDRs">- [ ] <[MRI denoising]> - <yt-play "dOsuIBUUDc4">- [ ] <[modeling neural control circuit]> - <yt-play "f2XVrDoF35A">- [ ] <[earth system software]> - <yt-play "O2rANteGTTY">- [ ] <[fracture]> - <yt-play "6zt-TEUuMu8">- [ ] <[fluid dynamic]> - <yt-play "R9b1xiqQtC8">- [ ] <[Parquet]> - <yt-play "-QRacAGsxOI">- [ ] <[pipeline]> - <yt-play "ECERq8BHvn4">
* Génétique** Collège [0/32]*** 1. Architecture du génome*** 2. Structure et fonction du génome humains: chromosomes sexuels*** 3. Structure et fonction du génome humains*** 4. Hérédité mendélienne*** 5. Génétique des populations*** 6. Cytogénétique conventionnelle*** 7. Cytogénétique moléculaire*** 8. Anomalies hémopathies et tumeurs solides*** STRT 9.Anomalies génétiques à l’échelle du gène*** STRT 10. Principales techniques d’analyses des anomalies génétiques à l’échelle du gène*** 11. Séquencage haut débit*** 12. Conseil génétique*** 13. Examen de l’enfant*** 14. Hétérogénéite des maladies génétiques*** 15. DPN, DPI*** 16. Dépistage néonatal*** 17. DPS*** 18. Dispositions législatives*** 19. Enjeux éthiques*** 20. Maladies mitochondriales*** 21. Empreinte parentale*** 22. Mutations dynamiques*** 23. Oncogénétique*** 24. Bases de données*** 25. Perspectives thérapeutiques*** 26. Pharmacogénétique*** 27. Génétique des maladies complexes*** 28. T21*** 29. Mucoviscidose*** 30. Xfragile*** 31. Maladies rares*** 32. Médecine génomique** TODO Biologie cellulaire et moléculaire Dunod [22/209]*** DONE Fiche 1*** DONE Fiche 2*** DONE Fiche 3*** DONE Fiche 4*** DONE Fiche 5*** DONE Fiche 6*** DONE Fiche 7*** DONE Fiche 8*** DONE Fiche 9*** DONE Fiche 10*** DONE Fiche 11*** DONE Fiche 12*** DONE Fiche 13*** DONE Fiche 14*** DONE Fiche 15*** DONE Fiche 16*** DONE Fiche 17*** Fiche 18*** Fiche 19*** Fiche 20*** Fiche 21*** Fiche 22*** Fiche 23*** Fiche 24*** Fiche 25*** Fiche 26*** Fiche 27*** Fiche 28*** DONE Fiche 29*** Fiche 30*** Fiche 31*** Fiche 32*** Fiche 33*** Fiche 34*** Fiche 35*** Fiche 36*** Fiche 37*** Fiche 38*** Fiche 39*** Fiche 40*** Fiche 41*** Fiche 42*** DONE Fiche 43*** Fiche 44*** DONE Fiche 45*** DONE Fiche 46*** DONE Fiche 47*** Fiche 48*** Fiche 49*** Fiche 50*** Fiche 51*** Fiche 52*** Fiche 53*** Fiche 54*** Fiche 55*** Fiche 56*** Fiche 57*** Fiche 58*** Fiche 59*** Fiche 60*** Fiche 61*** Fiche 62*** Fiche 63*** Fiche 64*** Fiche 65*** Fiche 66*** Fiche 67*** Fiche 68*** Fiche 69*** Fiche 70*** Fiche 71*** Fiche 72*** Fiche 73*** Fiche 74*** Fiche 75*** Fiche 76*** Fiche 77*** Fiche 78*** Fiche 79*** Fiche 80*** Fiche 81*** Fiche 82*** Fiche 83*** Fiche 84*** Fiche 85*** Fiche 86*** Fiche 87*** Fiche 88*** Fiche 89*** Fiche 90*** Fiche 91*** Fiche 92*** Fiche 93*** Fiche 94*** Fiche 95*** Fiche 96*** Fiche 97*** Fiche 98*** Fiche 99*** Fiche 100*** Fiche 101*** Fiche 102*** Fiche 103*** Fiche 104*** Fiche 105*** Fiche 106*** Fiche 107*** Fiche 108*** Fiche 109*** Fiche 110*** Fiche 111*** Fiche 112*** Fiche 113*** Fiche 114*** Fiche 115*** Fiche 116*** Fiche 117*** Fiche 118*** Fiche 119*** Fiche 120*** Fiche 121*** Fiche 122*** Fiche 123*** Fiche 124*** Fiche 125*** Fiche 126*** Fiche 127*** Fiche 128*** Fiche 129*** Fiche 130*** Fiche 131*** Fiche 132*** Fiche 133*** Fiche 134*** Fiche 135*** Fiche 136*** Fiche 137*** Fiche 138*** Fiche 139*** Fiche 140*** Fiche 141*** Fiche 142*** Fiche 143*** Fiche 144*** Fiche 145*** Fiche 146*** Fiche 147*** Fiche 148*** Fiche 149*** Fiche 150*** Fiche 151*** Fiche 152*** Fiche 153*** Fiche 154*** Fiche 155*** Fiche 156*** Fiche 157*** Fiche 158*** Fiche 159*** Fiche 160*** Fiche 161*** Fiche 162*** Fiche 163*** Fiche 164*** Fiche 165*** Fiche 166*** Fiche 167*** Fiche 168*** Fiche 169*** Fiche 170*** Fiche 171*** Fiche 172*** Fiche 173*** Fiche 174*** Fiche 175*** Fiche 176*** Fiche 177*** Fiche 178*** Fiche 179*** Fiche 180*** Fiche 181*** Fiche 182*** Fiche 183*** Fiche 184*** Fiche 185*** Fiche 186*** Fiche 187*** Fiche 188*** Fiche 189*** Fiche 190*** Fiche 191*** Fiche 192*** Fiche 193*** Fiche 194*** Fiche 195*** Fiche 196*** Fiche 197*** Fiche 198*** Fiche 199*** Fiche 200*** Fiche 201*** Fiche 202*** Fiche 203*** Fiche 204*** Fiche 205*** Fiche 206*** Fiche 207*** Fiche 208*** Fiche 209** TODO Biologie chimie Dunod* Divers** TODO Photos familleOn utilise le drive commun qu'a fait Elise. Pour éviter les soucis de connexion, on modifie juste le dossier partagé:https://drive.google.com/drive/folders/11wJ0E_KZv7I88wdv_ULHqd5KvWFfF0DF?usp=sharing_eip_m&invite=CPX0rho&ts=63ea1879Autres drives :alexis: https://drive.proton.me/urls/PQ5M6TKVRM#q8yulEV8T5WGpapa : https://www.mailo.com/mailo/docs/docs.php?s=IaK9Ajz8kwQJXNPnhJofRuDwyrNSZVy4&dir=mqn0f3%2bozZXc%2bwh4DeXwhVTY1Zz4zci5rZ4XcNHRmX7wPT0d9WG%2b0g%3d%3d&ea_encode=0*** DONE Copier photos famille drive papa -> drive proton, drive yvain sur drive familleCLOSED: [2023-02-12 Sun 23:17]*** TODO Copier photos famille depuis drive yvain sur drive famille*** TODO Trier photos sur drive yvain** DONE certificat de baptêmeCLOSED: [2023-11-22 Wed 20:28] SCHEDULED: <2023-11-21 Tue>/Entered on/ [2023-10-11 Wed 23:13]Message envoyé sur le site 2023-10-11 Wed*** DONE AppelerCLOSED: [2023-11-21 Tue 22:52] SCHEDULED: <2023-11-21 Tue>*** DONE Demander à AurélienCLOSED: [2023-11-21 Tue 22:52] SCHEDULED: <2023-11-21 Tue>** DONE Payer inscription gymnastiqueCLOSED: [2023-11-21 Tue 22:52] SCHEDULED: <2023-11-21 Tue>/Entered on/ [2023-11-19 Sun 22:41]** DONE Réserver location skiCLOSED: [2023-11-23 Thu 21:45] SCHEDULED: <2023-11-22 Wed>/Entered on/ [2023-11-22 Wed 22:04]** TODO Command minoxidilSCHEDULED: <2023-11-26 Sun>/Entered on/ [2023-11-25 Sat 11:30]
* Santé
* Moto:PROPERTIES::CATEGORY: moto:END:* Maison:PROPERTIES::CATEGORY: maison:END:** Serveur:PROPERTIES::CATEGORY: serveur:END:*** Seedbox:PROPERTIES::CATEGORY: seedbox:END:**** DONE Location (blackfriday)CLOSED: [2023-11-20 Mon 19:32] SCHEDULED: <2023-11-20 Mon>/Entered on/ [2023-11-20 Mon 18:29]**** TODO Re-partager musique :red:SCHEDULED: <2023-12-04 Mon>**** TODO Re-partager livres :mam:SCHEDULED: <2023-11-26 Sun>**** DONE Configurer rtorrentCLOSED: [2023-11-20 Mon 22:53] SCHEDULED: <2023-11-21 Tue>**** DONE Tester 1 livres :mam:CLOSED: [2023-11-20 Mon 22:05] SCHEDULED: <2023-11-21 Tue>**** DONE Ouvrir IP :mam:CLOSED: [2023-11-20 Mon 22:22] SCHEDULED: <2023-11-21 Tue>**** DONE Vérifier connectivity :mam:CLOSED: [2023-11-20 Mon 22:22] SCHEDULED: <2023-11-21 Tue>/Entered on/ [2023-11-20 Mon 22:04]* Banque:PROPERTIES::CATEGORY: banque:END:* Programmation :cs:** Gentoo :gentoo:*** GURU :guru:**** DONE Ebuild pour adapteur wifi TBW-108BCLOSED: [2023-05-22 Mon 22:50]Sur branche dev**** DONE net-wireless/rtl8723bu: migration to linux-mod-r1.eclassCLOSED: [2023-07-02 Sun 11:13] SCHEDULED: <2023-07-02 Sun>**** DONE Ebuild hutCLOSED: [2023-07-02 Sun 10:57]sur dev*** TODO Article nzbget sur wiki/Entered on/ [2022-10-22 Sat 17:31]** Learning Haskell :haskell:*** [#A] [[https://www.reddit.com/r/haskell/comments/npxfba/comment/h084wwa/?utm_source=share&utm_medium=web2x&context=3][Reddit suggestion]]]**** Learn Foundational building blocks- [X] [[https://mmhaskell.com/monads/functors][Functor]]- [X] [[https://mmhaskell.com/monads/applicatives][Applicatives]]- [X] [[https://mmhaskell.com/monads/tutorial][Monads]]- [X] [[https://mmhaskell.com/monads/reader-writer][Reader, writer]]- [X] [[https://mmhaskell.com/monads/state][State]]- [X] [[https://mmhaskell.com/monads/transformers][Transformers]]- [ ] [[https://mmhaskell.com/monads/laws][Laws]]**** Real-world example***** STRT Look at the example- [X] Database- [ ] API***** Relax for a few days and watch how interactive programs are being composed***** Get back to the real-world example and make it a complete Cabal project.***** [[https://mmhaskell.com/testing/test-driven-development][Testing]]**** [#A] Best resource : [[https://downloads.haskell.org/~ghc/8.10.4/docs/html/users_guide/glasgow_exts.html#language-options][Language Reference]]whenever you see an unknown language extension or a compilation flag, look it up in Language Reference and try to understand it. You don't have to fully understand them though, just read about them and keep them on your mind. One day they will begin to automatically click into a sound set of concepts.Language Reference is one of the most underappreciated sources of information (it's almost universally overlooked in language communities - it was the case for Python, and I find it to be true for Haskell as well). You mentioned that you don't like REPL examples, and neither do I. Luckily, the User Guide/Reference has introductory sections for people like us. Once I knew how to compile a single file and to run it, the rest was just a matter of getting to know things by their name in a new ecosystem.**** DONE Learn to compose thingsWhen you already know how to compile and run single-module interactive console programs, it takes about a day to understand basics of Cabal, and about a week to learn about input parsing and output formatting. Do you need CLI args? Use optparse-applicative. Env vars? Use envy. JSON? Use aeson and a cheatsheet. Don't think about performance and/or API conventions, that's not what you should be concerned of at this point, as you are just learning to compose things together from individual parts.**** Experiment with various libraires, read haskell planetariumAt this point you have enough knowledge to begin experimenting with various libraries and APIs. Learn how to use Hoogle, and read as much as you can/want on Haskell Planetarium.*** KILL Learn Haskell for your greater good:PROPERTIES::CUSTOM_ID: kill-learn-haskell-for-your-greater-good:END:50%*** HOLD [[books.org::Haskell%20Programming%20From%20First%20Principles][Haskell programming from first principles]]*** TODO 24 days of haskell**** TODO <[Hackage 2015]> - "https://conscientiousprogrammer.com/blog/2015/11/30/haskell-tidbits-24-days-of-hackage-2015-day-1-introduction-and-stack/"**** TODO <[GHC extensions]> - "https://blog.ocharles.org.uk/pages/2014-12-01-24-days-of-ghc-extensions.html"*** STRT <[Hackage 2012]> - https://blog.ocharles.org.uk/pages/2012-12-01-24-days-of-hackage.html-> postgresql*** TODO <[Hackage 2013]> - https://blog.ocharles.org.uk/pages/2013-12-01-24-days-of-hackage.html*** GHC**** GHC commentaryNotamment Ollie Charles's 24 days of GHC Extensions,**** Lire [[https://www.aosabook.org/en/ghc.html]]*** Vidéos**** STRT https://www.youtube.com/watch?v=re96UgMk6GQ*** Articles historiques1. [[https://watermark.silverchair.com/320098.pdf?token=AQECAHi208BE49Ooan9kkhW_Ercy7Dm3ZL_9Cf3qfKAc485ysgAAAsYwggLCBgkqhkiG9w0BBwagggKzMIICrwIBADCCAqgGCSqGSIb3DQEHATAeBglghkgBZQMEAS4wEQQMHXfjdjwhGI2t4bLLAgEQgIICeQjZ-I8gmuaFqBktP4IOifHODtMAHcNF_LwRYyq7NswQ7vT6LJho9P_junCAORLGMV9dgq9JMePH2PFKNxXxrEP1VY7rIDG0gzoeObSkgMDn4MXalrIxD3ejY8vsGYy6vce8Kh70J_UJ8RamO1l3BNNUzy2W6VRaa_cMQr_ekdwcz0oihz0BVKn_bgm_8DjiiPhzj8uU9flVhi13t_oIFA6b3At2QMmPe7Z9OyfLkXivKkmKKNoHwSS7AnTIYAKCO383e4kG6NzZ_elai-XMAJs2Nk0vcgaltld1KeaW3269104DdIlFGevJUVNgwE_4LIheSYRZr9Gr0yRR6TROxdsyxrmgQ22Pzxxpnl8-KdjkW6aRSCKNk_yb5hYcPoRa3ldc5yPV15j8i4t9Mv4U_mBwmIRtMIKPdEHeMvcRx6c8_8uT4RV2esuOPfZlA05bzBgJhMS87M8myxisH-exkTMkm58o6nzHf1lGxzn_JS1VSHbhJCUl82ubzzOWjvl3QJM_vv805XTbn_G-fcRi0d9EQIRTqoObWVFyXW-pz16bWoZPZnBQ1gOmc3hPTGBMZjFR6p9VEAO7bKcK8o0yQDjVWEELNwfAAHc-oF_wLiEjXDNBoUttghgQzzvymKY_jSZhcU8TraVu2i551fpuDNEjSJd0qY5Rg3J6eWU550nJmnoWmX6o7KGiYp0vVMfOoFYXJ1trZWSGoRhDQP2LOLIOt3t2idlj6kV_MoCY3BRnkbxf4XIH7gLJf6Dky6hXFbTU8Fjsn8XHBeKSmaAYJ-sbmGB_BdZO8hHyvHvPv0lTtGcSuKywoJhMbblXRzyuacj_6mZQl5j3tAWhy][Why functional programming matters]]Très lisible2. [[https://dl.acm.org/doi/pdf/10.1145/91556.91592][Comprehending monads]]Introduction du concept3. [[https://dl.acm.org/doi/pdf/10.1145/158511.158524][Imperative functional programming]]Application des monads poru résoudre le problème IO** Julia:PROPERTIES::CATEGORY: julia:END:*** TODO Juliacon 2023:PROPERTIES::ID: 42f6a7bf-ac90-4737-884e-c35187776a4c:END:- [ ] <[Graphs, matrices]> - <yt-play "X2JEWdCFf70">- [ ] <[Alan, julia and climate]> - <yt-play "SclkiqCn4Cs">- [ ] <[Sherlocks Homes, mathematics and julia]> - <yt-play "zX-U6-6Prso">- [ ] <[Sound synthesis]> - <yt-play "SvnDr9nnOZs">- [ ] <[JuMP by example]> - <yt-play "rIan_XbYyaM">- [ ] <[neurophysiological symbolic modeling]> - <yt-play "qC6tzsn8Uxc">- [ ] <yt-play "ipDCx174Qkw">- [ ] <yt-play "hKa2eTeb_lo">- [ ] <yt-play "4omFGfcvvOY">- [ ] <yt-play "d7SA36kVaq0">- [ ] <yt-play "5uF3VqgjiVE">- [ ] <yt-play "jIuRXzo4m38">- [ ] <yt-play "iUarLpmZmco">- [ ] <yt-play "WVT9wJegC6Q">- [ ] <yt-play "ZVvP7rAIvkE">- [ ] <yt-play "RXjjTQffen0">- [ ] <yt-play "TpyHGaCB8P4">- [ ] <yt-play "ksh-CNM2YJU">- [ ] <yt-play "_sZdWVZeKqI">- [ ] <yt-play "_Y6mNrN7eWA">- [ ] <yt-play "tnw_BI2tRaA">- [ ] <yt-play "qgmgg_Bzgyg">- [ ] <yt-play "Nlq3J7PCB_Q">- [ ] <yt-play "ruxYAY5_bfE">- [X] <[Biomakie.jl]> - <yt-play "-C7Zbh6UTgk">- [X] <[machine learing for biological data]> - <yt-play "Q9eYgwvJfWE">- [X] <[Genomic analysis]> - <yt-play "egWrDz6RDRs">- [ ] <[MRI denoising]> - <yt-play "dOsuIBUUDc4">- [ ] <[modeling neural control circuit]> - <yt-play "f2XVrDoF35A">- [ ] <[earth system software]> - <yt-play "O2rANteGTTY">- [ ] <[fracture]> - <yt-play "6zt-TEUuMu8">- [ ] <[fluid dynamic]> - <yt-play "R9b1xiqQtC8">- [ ] <[Parquet]> - <yt-play "-QRacAGsxOI">- [ ] <[pipeline]> - <yt-play "ECERq8BHvn4">* Backups:PROPERTIES::CATEGORY: backup:END:** TODO Git-annex en local*** DONE vers /annexCLOSED: [2023-10-01 Sun 15:34] SCHEDULED: <2023-09-30 Sat>- [X] public- [X] private- [X] data*** DONE vers raspberry:/media/annexCLOSED: [2023-10-01 Sun 15:34] SCHEDULED: <2023-10-01 Sun>- [X] public- [X] private- [X] data*** TODO vers laptop:~/annex- [ ] public- [X] private- [ ] data*** DONE depuis /annexCLOSED: [2023-10-01 Sun 16:15] SCHEDULED: <2023-09-30 Sat>- [X] public- [X] private- [ ] data*** DONE mega avec resticCLOSED: [2023-10-01 Sun 16:08] SCHEDULED: <2023-10-01 Sun>- [X] public- [X] private*** DONE google drive avec resticCLOSED: [2023-10-01 Sun 15:33] SCHEDULED: <2023-10-01 Sun>- [X] public- [X] private*** DONE Tester backup avec resticCLOSED: [2023-10-01 Sun 16:15] SCHEDULED: <2023-10-01 Sun>- [X] private sur gdrive- [ ] public sur gdrive** DONE papers : git lfs (non encrypté)CLOSED: [2023-09-30 Sat 19:19] SCHEDULED: <2023-09-30 Sat>
---title: Research in org-mode (GTD, bibliography)...Here's is my current (simple) workflow for working in org-mode to do research by [staying organized with Org agenda](#staying-organized-with-org-agenda), [managing your bibliography](#bibliography-with-org-mode) and [write some papers](#writing-papers-org-mode-or-latex).## Staying organized with Org agendaNicolas Rougier has a [very nice configuration](https://www.labri.fr/perso/nrougier/GTD/index.html) for implementing Getting Things Done (GTD) in emacs:But I prefer to only have the dasks for today in the agenda, like this:For managing projects, I use the `CATEGORY` property (displayed left in org-agenda) and add tags for more details (displayed right in org-agenda).Adding new tasks is done through org-capture into an `inbox.org` file and refiled as soon as possible into a correct project drawer in `projects.org`. Here is the full configuration.```;;; Org config:(setq org-directory "~/org/") ; Must be set before org loads. Other general config come later.;; Use daily tasks as default(after! org(setq org-agenda-files (list "inbox.org" "projects.org" "projects/thesis") ; My agenda filesorg-archive-location (concat org-directory "archive/%s_archive::") ; Archive folderorg-agenda-start-day "today"org-agenda-span 'day ; One da is enoughorg-log-done 'time ; Store time when finishing a taskorg-refile-allow-creating-parent-nodes 'confirm);; Define capture for inbox tasks. As well as sports;; To avoid putting newlines everywhere, mapconcat intersperse "\n" between list elements(setq org-capture-templates`(("i" "Inbox" entry (file "inbox.org")"* TODO %?\n/Entered on/ %U")("t" "Bisonex" entry (file "projects/thesis.org")"* TODO %?\n/Entered on/ %U"))))```## Bibliography with org-mode[citar](https://github.com/emacs-citar/citar) is a very nice way to add citations by simplying using `SPC m @` and typing parts of the author or title. Configuration:;; Manage bibliography with citar (vertico is the default completion engine)(after! citar(setq! citar-bibliography '("~/research/biblio.bib" "~/research/bisonex/thesis/biblio.bib")citar-library-paths '("~/papers")citar-notes-paths '("~/research/references")))Within Doom-emacs, pressing `ENTER` on a citation will give a choice : go to the URL, open the PDF or goes to a dedicated org-mode file containing your note.Instead of having multiple org files (one per paper), Gregory J. Stein's post about [a single org-mode file containing annotated bibliography](https://cachestocaches.com/2020/3/org-mode-annotated-bibliography/).From this org-file, you can export the bibliography in LaTeX with org-tangle.With a custom elisp (or org-ref), you can easily add from a DOI bibtex code.;; From https://www.anghyflawn.net/blog/2014/emacs-give-a-doi-get-a-bibtex-entry/(defun get-bibtex-from-doi (doi)"Get a BibTeX entry from the DOI"(interactive "MDOI: ")(let ((url-mime-accept-string "text/bibliography;style=bibtex"))(with-current-buffer(url-retrieve-synchronously(format "http://dx.doi.org/%s"(replace-regexp-in-string "http://dx.doi.org/" "" doi)))(switch-to-buffer (current-buffer))(goto-char (point-max))(setq bibtex-entry(buffer-substring(string-match "@" (buffer-string))(point)))(kill-buffer (current-buffer))))(insert (decode-coding-string bibtex-entry 'utf-8))(bibtex-fill-entry))In practice, I found it a bit cumbersome to add manually the org-structure with the title. My current workflow exploit org-bibtex to convert bibtex code into org-mode structure ! After generating the bibtex with the previous code, I cut the bibtex then cadd `org-bibtex-yank`. It will give* From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline:PROPERTIES::TITLE: From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline:BTYPE: article:CUSTOM_ID: vanDerAuwera2013:VOLUME: 43:ISSN: 1934-340X:URL: http://dx.doi.org/10.1002/0471250953.bi1110s43:DOI: 10.1002/0471250953.bi1110s43:NUMBER: 1:JOURNAL: Current Protocols in Bioinformatics:PUBLISHER: Wiley:AUTHOR: Van der Auwera, Geraldine A. and Carneiro, Mauricio O. and Hartl, Christopher and Poplin, Ryan and del Angel, Guillermo and Levy‐Moonshine, Ami and Jordan, Tadeusz and Shakir, Khalid and Roazen, David and Thibault, Joel and Banks, Eric and Garimella, Kiran V. and Altshuler, David and Gabriel, Stacey and DePristo, Mark A.:YEAR: 2013:MONTH: Oct:END:Then call `org-bibtex` to generate the final bibtex file.## Writing papers : org-mode or LaTeX ?It is possible to write a full manuscript in org-mode, see Daniel Gomez's [repository on Github](https://github.com/dangom/org-thesis) example.It allows to fully concentrate on the content as writing in full LaTeX makes it harder due to the extra formatting. However, set-up can be a bit cumbersume and collaborating with others in not easy.My current setup is to write the outline and most of the content in org-mode, then export to latex and upload it to Overleaf.