eschnett/cactusamrex - Change 6EY6HQW65NVGKRGVD5X6VTX67URNQL4HNUUKSUXBSNV7CNY7JOFQC

Pipelines: Use root in container

Created by Erik Schnetter on July 14, 2019

6EY6HQW65NVGKRGVD5X6VTX67URNQL4HNUUKSUXBSNV7CNY7JOFQC

Dependencies

In channels

main

master

Change contents

Replacement in azure-pipelines/Dockerfile at line 4 [4.32]

B:BD[4.65] → [4.65:374]

# Add user "cactus" with sudo privileges
RUN apt-get update && apt-get -y install sudo && rm -rf /var/lib/apt/lists/*
RUN echo '%sudo ALL=(ALL) NOPASSWD:ALL' >>/etc/sudoers
# Don't use /home since this can lead to ambiguities with Singularity
RUN useradd -G sudo -m -s /bin/bash -d /cactus cactus
USER cactus

[4.65]

[4.374]

RUN mkdir /cactus

Replacement in azure-pipelines/Dockerfile at line 8 [4.32]

B:BD[4.417] → [4.417:577]

RUN sudo apt-get update && sudo apt-get -y install build-essential g++ gfortran  libopenmpi-dev perl pkg-config python wget && sudo rm -rf /var/lib/apt/lists/*

[4.417]

[4.577]

RUN apt-get update && apt-get -y install build-essential g++ gfortran  libopenmpi-dev perl pkg-config python wget && rm -rf /var/lib/apt/lists/*

Replacement in azure-pipelines/Dockerfile at line 11 [4.32]

B:BD[4.594] → [4.594:779]

RUN wget https://github.com/Kitware/CMake/releases/download/v3.14.5/cmake-3.14.5-Linux-x86_64.tar.gz && sudo tar xzf cmake-3.14.5-Linux-x86_64.tar.gz -C /usr/local --strip-components=1

[4.594]

[4.779]

RUN wget https://github.com/Kitware/CMake/releases/download/v3.14.5/cmake-3.14.5-Linux-x86_64.tar.gz && tar xzf cmake-3.14.5-Linux-x86_64.tar.gz -C /usr/local --strip-components=1 && rm cmake-3.14.5-Linux-x86_64.tar.gz

Replacement in azure-pipelines/Dockerfile at line 14 [4.32]

B:BD[4.794] → [4.794:1027]

RUN wget https://github.com/AMReX-Codes/amrex/archive/19.07.tar.gz && tar xzf 19.07.tar.gz && cd amrex-19.07 && mkdir build && cd build && cmake -DENABLE_OMP=ON -DCMAKE_INSTALL_PREFIX=/cactus/amrex .. && make -j2 && make -j2 install

[4.794]

[4.1027]

RUN wget https://github.com/AMReX-Codes/amrex/archive/19.07.tar.gz && tar xzf 19.07.tar.gz && cd amrex-19.07 && mkdir build && cd build && cmake -DENABLE_OMP=ON -DCMAKE_INSTALL_PREFIX=/cactus/amrex .. && make -j2 && make -j2 install && cd ../.. && rm -rf amrex-19.07

Replacement in azure-pipelines/Dockerfile at line 17 [4.32]

B:BD[4.1048] → [4.1048:1112]

RUN echo 'docker' >$HOME/.hostname && mkdir /cactus/simulations

[4.1048]

[4.1112]

RUN echo 'docker' >$HOME/.hostname && mkdir /simulations

Deletion in azure-pipelines/Dockerfile at line 27 [4.32]

B:BD[4.1374] → [5.0:15]

B:BD[5.15] → [3.0:123]


# Create user
RUN sudo groupadd azure_pipelines_sudo
RUN sudo useradd -u 1001 -G sudo,azure_pipelines_sudo -m -s /bin/bash -d /vsts vsts

Replacement in azure-pipelines.yml at line 13 [6.570]

B:BD[2.40] → [2.40:291]

    cp defs.local.init Cactus/simfactory/etc
    cp docker.ini Cactus/simfactory/mdb/machines
    cp ubuntu.cfg Cactus/simfactory/mdb/optionlists
    cp docker.sub Cactus/simfactory/mdb/submitscripts
    cp docker.run Cactus/simfactory/mdb/runscripts

[2.40]

[2.291]

    cp /cactus/defs.local.init Cactus/simfactory/etc
    cp /cactus/docker.ini Cactus/simfactory/mdb/machines
    cp /cactus/ubuntu.cfg Cactus/simfactory/mdb/optionlists
    cp /cactus/docker.sub Cactus/simfactory/mdb/submitscripts
    cp /cactus/docker.run Cactus/simfactory/mdb/runscripts

Replacement in azure-pipelines.yml at line 22 [6.570]

B:BD[7.2322] → [2.358:420]

    ./simfactory/bin/sim build -j2 --thornlist=$HOME/amrex.th

[7.2322]

[7.2764]

    ./simfactory/bin/sim build -j2 --thornlist=/cactus/amrex.th