eschnett/cactusamrex - Change OJZWEAJRLOA5FZAC6FMGBQ6XFQFDNO55IRWLFWDAYWM54MUIU5LAC

Output all levels into a single file

Created by Erik Schnetter on July 17, 2019

OJZWEAJRLOA5FZAC6FMGBQ6XFQFDNO55IRWLFWDAYWM54MUIU5LAC

Dependencies

In channels

master

main

Change contents

Replacement in AMReX/src/driver.cxx at line 70 [3.15972]

B:BD[2.152] → [2.152:252]

    nbx.setSmall(d, md - rd / (1 << (lev + 1)));
    nbx.setBig(d, md + rd / (1 << (lev + 1)) - 1);

[2.152]

[4.1158]

    // mark one fewer cells; AMReX seems to add one cell
    nbx.setSmall(d, md - rd / (1 << (lev + 1)) + 1);
    nbx.setBig(d, md + rd / (1 << (lev + 1)) - 2);

Replacement in AMReX/src/io.cxx at line 35 [7.107]

B:BD[5.500] → [6.1894:2017]

∅:D[6.2017] → [5.501:566]

B:BD[8.1058] → [5.501:566]

    for (const auto &restrict leveldata : ghext->leveldata) {
      auto &restrict groupdata = leveldata.groupdata.at(gi);
      if (groupdata.mfab.size() > 0) {
        const int tl = 0;

[5.500]

[7.751]

    auto &restrict groupdata0 = ghext->leveldata.at(0).groupdata.at(gi);
    if (groupdata0.mfab.size() > 0) {
      const int tl = 0;
      string groupname = unique_ptr<char>(CCTK_GroupName(gi)).get();
      groupname = regex_replace(groupname, regex("::"), "-");
      for (auto &c : groupname)
        c = tolower(c);
      ostringstream buf;
      buf << "wavetoy/" << groupname;
      buf << ".it" << setw(6) << setfill('0') << cctk_iteration;
      string filename = buf.str();

Replacement in AMReX/src/io.cxx at line 48 [7.107]

B:BD[7.752] → [5.567:762]

        string groupname = unique_ptr<char>(CCTK_GroupName(gi)).get();
        groupname = regex_replace(groupname, regex("::"), "-");
        for (auto &c : groupname)
          c = tolower(c);

[7.752]

[5.762]

      Vector<string> varnames(groupdata0.numvars);
      for (int vi = 0; vi < groupdata0.numvars; ++vi) {

Replacement in AMReX/src/io.cxx at line 51 [7.107]

B:BD[5.789] → [5.789:829]

B:BD[5.829] → [6.2018:2086]

∅:D[6.2086] → [5.893:997]

B:BD[5.893] → [5.893:997]

        buf << "wavetoy/" << groupname;
        buf << ".rl" << setw(2) << setfill('0') << leveldata.level;
        buf << ".it" << setw(6) << setfill('0') << cctk_iteration;
        string filename = buf.str();

[5.789]

[7.1083]

        buf << CCTK_VarName(groupdata0.firstvarindex + vi);
        for (int i = 0; i < tl; ++i)
          buf << "_p";
        varnames.at(vi) = buf.str();
      }
      Vector<const MultiFab *> mfabs(ghext->leveldata.size());
      Vector<Geometry> geoms(ghext->leveldata.size());
      Vector<int> iters(ghext->leveldata.size());
      Vector<IntVect> reffacts(ghext->leveldata.size());
      for (const auto &restrict leveldata : ghext->leveldata) {
        mfabs.at(leveldata.level) = &*leveldata.groupdata.at(gi).mfab.at(tl);
        geoms.at(leveldata.level) = ghext->amrmesh->Geom(leveldata.level);
        iters.at(leveldata.level) = cctk_iteration;
        reffacts.at(leveldata.level) = IntVect{2, 2, 2};
      }

Replacement in AMReX/src/io.cxx at line 68 [7.107]

B:BD[7.1084] → [5.998:1050]

B:BD[5.1050] → [9.50:107]

∅:D[9.107] → [8.1663:1692]

B:BD[8.1663] → [8.1663:1692]

B:BD[8.1692] → [9.108:169]

∅:D[9.169] → [8.1752:1816]

B:BD[8.1752] → [8.1752:1816]

B:BD[8.1816] → [9.170:209]

∅:D[5.1089] → [8.1879:1889]

∅:D[9.209] → [8.1879:1889]

B:BD[8.1879] → [8.1879:1889]

        Vector<string> varnames(groupdata.numvars);
        for (int vi = 0; vi < groupdata.numvars; ++vi) {
          ostringstream buf;
          buf << CCTK_VarName(groupdata.firstvarindex + vi);
          for (int i = 0; i < tl; ++i)
            buf << "_p";
          varnames.at(vi) = buf.str();
        }

[7.1084]

[5.1090]

      // TODO: Output all groups into a single file
      WriteMultiLevelPlotfile(filename, mfabs.size(), mfabs, varnames, geoms,
                              cctk_time, iters, reffacts);

Replacement in AMReX/src/io.cxx at line 72 [7.107]

B:BD[5.1091] → [5.1091:1276]

B:BD[5.1276] → [10.1648:1781]

∅:D[5.1349] → [7.1475:1483]

∅:D[10.1781] → [7.1475:1483]

∅:D[6.2164] → [7.1475:1483]

∅:D[8.1889] → [7.1475:1483]

B:BD[7.1475] → [7.1475:1483]

        // TODO: Output all levels into a single file
        // TODO: Output all groups into a single file
        WriteSingleLevelPlotfile(filename, *groupdata.mfab.at(tl), varnames,
                                 ghext->amrmesh->Geom(leveldata.level),
                                 cctk_time, cctk_iteration);
      }

[5.1091]

[9.210]

      count_vars += ghext->leveldata.at(0).groupdata.at(gi).numvars;

Deletion in AMReX/src/io.cxx at line 74 [7.107]
B:BD[9.216] → [9.216:283]
```
    count_vars += ghext->leveldata.at(0).groupdata.at(gi).numvars;
```

Replacement in azure-pipelines/amrex.par at line 8 [11.12]

B:BD[4.6717] → [4.6717:6783]

AMReX::ncells_x = 128
AMReX::ncells_y = 128
AMReX::ncells_z = 128

[4.6717]

[4.6783]

AMReX::ncells_x = 16 # 128
AMReX::ncells_y = 16 # 128
AMReX::ncells_z = 16 # 128

Replacement in azure-pipelines/amrex.par at line 12 [11.12]
∅:D[4.6784] → [11.92:117]
B:BD[11.92] → [11.92:117]
```
Cactus::cctk_itlast = 10
```
[4.6784]
```
Cactus::cctk_itlast = 32
AMReX::out_every = 16
```